HL_8QBT_115

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUCGCAAGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QBT_115 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3422

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8QBT|1|i|G|184
8QBT|1|i|U|185
8QBT|1|i|C|186
8QBT|1|i|G|187
8QBT|1|i|C|188
8QBT|1|i|A|189
8QBT|1|i|A|190
8QBT|1|i|G|191
8QBT|1|i|A|192
8QBT|1|i|C|193

Current chains

Chain i

16S rRNA

Nearby chains

Chain 2

30S ribosomal protein S20