HL_8QBT_119

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGUUAAUACCU

Length

11 nucleotides

Bulged bases

8QBT|1|i|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QBT_119 not in the Motif Atlas

Geometric match to HL_9G4P_001

Geometric discrepancy: 0.2641

The information below is about HL_9G4P_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8QBT|1|i|A|461
8QBT|1|i|G|462
8QBT|1|i|U|463
8QBT|1|i|U|464
8QBT|1|i|A|465
8QBT|1|i|A|466
8QBT|1|i|U|467
8QBT|1|i|A|468
8QBT|1|i|C|469
8QBT|1|i|C|470
8QBT|1|i|U|471

Current chains

Chain i

16S rRNA

Nearby chains