HL_8QFD_002
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UAACCA
- Length
- 6 nucleotides
- Bulged bases
- 8QFD|1|5|C|67
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QFD_002 not in the Motif Atlas
- Homologous match to HL_8C3A_002
- Geometric discrepancy: 0.0889
- The information below is about HL_8C3A_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_22523.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
8QFD|1|5|U|63
8QFD|1|5|A|64
8QFD|1|5|A|65
8QFD|1|5|C|66
8QFD|1|5|C|67
8QFD|1|5|A|68
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L13
- Chain N
- 60S ribosomal protein L15
- Chain a
- 60S ribosomal protein L27a
- Chain i
- 60S ribosomal protein L36
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