HL_8QFD_005
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UCUGAUCG
- Length
- 8 nucleotides
- Bulged bases
- 8QFD|1|5|C|205
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QFD_005 not in the Motif Atlas
- Homologous match to HL_8C3A_005
- Geometric discrepancy: 0.3764
- The information below is about HL_8C3A_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_58705.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
8QFD|1|5|U|199
8QFD|1|5|C|200
8QFD|1|5|U|201
8QFD|1|5|G|202
8QFD|1|5|A|203
8QFD|1|5|U|204
8QFD|1|5|C|205
8QFD|1|5|G|206
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain Y
- 60S ribosomal protein L26
- Chain e
- 60S ribosomal protein L32
Coloring options: