HL_8QFD_013

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUGAGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QFD_013 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3104

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

8QFD|1|5|G|744
8QFD|1|5|U|745
8QFD|1|5|G|900
8QFD|1|5|A|901
8QFD|1|5|G|902
8QFD|1|5|U|903

Current chains

Chain 5

28S rRNA

Nearby chains

Chain S

60S ribosomal protein L18a