HL_8QFD_017
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUACGAAAG
- Length
- 9 nucleotides
- Bulged bases
- 8QFD|1|5|A|1363
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QFD_017 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.2095
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8QFD|1|5|C|1355
8QFD|1|5|U|1356
8QFD|1|5|A|1360
8QFD|1|5|C|1361
8QFD|1|5|G|1362
8QFD|1|5|A|1363
8QFD|1|5|A|1364
8QFD|1|5|A|1365
8QFD|1|5|G|1366
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4
- Chain L
- 60S ribosomal protein L13
- Chain N
- 60S ribosomal protein L15
- Chain Y
- 60S ribosomal protein L26
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