HL_8QFD_027
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GGUAAGC
- Length
- 7 nucleotides
- Bulged bases
- 8QFD|1|5|G|1861
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QFD_027 not in the Motif Atlas
- Homologous match to HL_5TBW_025
- Geometric discrepancy: 0.0719
- The information below is about HL_5TBW_025
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
8QFD|1|5|G|1856
8QFD|1|5|G|1857
8QFD|1|5|U|1858
8QFD|1|5|A|1859
8QFD|1|5|A|1860
8QFD|1|5|G|1861
8QFD|1|5|C|1862
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain I
- 60S ribosomal protein L10
Coloring options: