HL_8QFD_030
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CAGUCGGACGCUACG
- Length
- 15 nucleotides
- Bulged bases
- 8QFD|1|5|U|2259, 8QFD|1|5|C|2261
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QFD_030 not in the Motif Atlas
- Geometric match to HL_4OOG_001
- Geometric discrepancy: 0.3597
- The information below is about HL_4OOG_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_12626.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 17
Unit IDs
8QFD|1|5|C|2079
8QFD|1|5|A|2080
8QFD|1|5|G|2081
8QFD|1|5|U|2082
8QFD|1|5|C|2083
8QFD|1|5|G|2253
8QFD|1|5|G|2254
8QFD|1|5|A|2255
8QFD|1|5|C|2256
8QFD|1|5|G|2257
8QFD|1|5|C|2258
8QFD|1|5|U|2259
8QFD|1|5|A|2260
8QFD|1|5|C|2261
8QFD|1|5|G|2262
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain E
- 60S ribosomal protein L6
- Chain Q
- 60S ribosomal protein L18
- Chain r
- 60S ribosomal protein L28
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