HL_8QFD_033

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

8QFD|1|5|G|2413, 8QFD|1|5|U|2417

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QFD_033 not in the Motif Atlas

Homologous match to HL_5TBW_032

Geometric discrepancy: 0.1694

The information below is about HL_5TBW_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8QFD|1|5|A|2412
8QFD|1|5|G|2413
8QFD|1|5|C|2414
8QFD|1|5|A|2415
8QFD|1|5|G|2416
8QFD|1|5|U|2417
8QFD|1|5|U|2418

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

60S ribosomal protein L17

Chain R

60S ribosomal protein L19