HL_8QFD_038

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

8QFD|1|5|U|2623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QFD_038 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1787

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8QFD|1|5|G|2616
8QFD|1|5|U|2617
8QFD|1|5|U|2618
8QFD|1|5|C|2619
8QFD|1|5|U|2620
8QFD|1|5|C|2621
8QFD|1|5|U|2622
8QFD|1|5|U|2623
8QFD|1|5|U|2624

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

60S ribosomal protein L19

Chain U

60S ribosomal protein L22