HL_8QFD_040

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGUUCC

Length

6 nucleotides

Bulged bases

8QFD|1|5|U|2699, 8QFD|1|5|C|2701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QFD_040 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1136

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8QFD|1|5|G|2697
8QFD|1|5|G|2698
8QFD|1|5|U|2699
8QFD|1|5|U|2700
8QFD|1|5|C|2701
8QFD|1|5|C|2702

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

60S ribosomal protein L19

Chain X

60S ribosomal protein L23a