HL_8QFD_054
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 8QFD|1|5|G|4195
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QFD_054 not in the Motif Atlas
- Homologous match to HL_8C3A_055
- Geometric discrepancy: 0.0874
- The information below is about HL_8C3A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
8QFD|1|5|C|4193
8QFD|1|5|U|4194
8QFD|1|5|G|4195
8QFD|1|5|G|4196
8QFD|1|5|G|4197
8QFD|1|5|G|4198
8QFD|1|5|C|4199
8QFD|1|5|G|4200
8QFD|1|5|G|4201
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain I
- 60S ribosomal protein L10
- Chain b
- 60S ribosomal protein L29
- Chain s
- E3 UFM1-protein ligase 1
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