HL_8QFD_063

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QFD_063 not in the Motif Atlas

Geometric match to HL_5TBW_063

Geometric discrepancy: 0.111

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8QFD|1|5|U|4497
8QFD|1|5|U|4498
8QFD|1|5|G|4499
8QFD|1|5|U|4500
8QFD|1|5|U|4501
8QFD|1|5|C|4502
8QFD|1|5|A|4503

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3