HL_8QFD_069

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

8QFD|1|5|U|4975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QFD_069 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.0963

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8QFD|1|5|G|4974
8QFD|1|5|U|4975
8QFD|1|5|A|4976
8QFD|1|5|G|4977
8QFD|1|5|A|4978
8QFD|1|5|C|4979
8QFD|1|5|G|4980
8QFD|1|5|A|4981
8QFD|1|5|C|4982

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

60S ribosomal protein L17