HL_8QFS_002

3D structure

PDB id

8QFS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SidH from Legionella pneumophila

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

G(5MU)(PSU)CGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QFS_002 not in the Motif Atlas

Homologous match to HL_6CFJ_108

Geometric discrepancy: 0.0882

The information below is about HL_6CFJ_108

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

8QFS|1|B|G|53
8QFS|1|B|5MU|54
8QFS|1|B|PSU|55
8QFS|1|B|C|56
8QFS|1|B|G|57
8QFS|1|B|A|58
8QFS|1|B|U|59
8QFS|1|B|U|60
8QFS|1|B|C|61

Current chains

Chain B

tRNA

Nearby chains

Chain C

Elongation factor Tu

Chain A

Protein SidH