HL_8QHC_002
3D structure
- PDB id
- 8QHC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SidH from Legionella pneumophila in complex with LubX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- G(5MU)(PSU)CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: 5MU, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QHC_002 not in the Motif Atlas
- Homologous match to HL_6CFJ_108
- Geometric discrepancy: 0.0828
- The information below is about HL_6CFJ_108
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8QHC|1|B|G|53
8QHC|1|B|5MU|54
8QHC|1|B|PSU|55
8QHC|1|B|C|56
8QHC|1|B|G|57
8QHC|1|B|A|58
8QHC|1|B|U|59
8QHC|1|B|U|60
8QHC|1|B|C|61
Current chains
- Chain B
- t-RNA
Nearby chains
- Chain A
- Protein SidH
- Chain C
- Elongation factor Tu
Coloring options: