HL_8QOA_009

3D structure

PDB id

8QOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SecM-stalled Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

8QOA|1|A|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOA_009 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.0932

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

8QOA|1|A|C|342
8QOA|1|A|U|343
8QOA|1|A|A|344
8QOA|1|A|C|345
8QOA|1|A|G|346
8QOA|1|A|G|347

Current chains

Chain A

16S rRNA

Nearby chains

Chain j

Large ribosomal subunit protein uL14

Chain o

Large ribosomal subunit protein bL19