HL_8QOA_023

3D structure

PDB id

8QOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SecM-stalled Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8QOA|1|A|U|1030

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOA_023 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2962

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8QOA|1|A|C|1028
8QOA|1|A|U|1029
8QOA|1|A|U|1030
8QOA|1|A|C|1031
8QOA|1|A|G|1032
8QOA|1|A|G|1033

Current chains

Chain A

16S rRNA

Nearby chains