HL_8QOA_026

3D structure

PDB id

8QOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SecM-stalled Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

8QOA|1|A|C|1136, 8QOA|1|A|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOA_026 not in the Motif Atlas

Homologous match to HL_5J7L_025

Geometric discrepancy: 0.2112

The information below is about HL_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

8QOA|1|A|G|1134
8QOA|1|A|U|1135
8QOA|1|A|C|1136
8QOA|1|A|C|1137
8QOA|1|A|G|1138
8QOA|1|A|G|1139
8QOA|1|A|C|1140

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9