HL_8QOA_034

3D structure

PDB id

8QOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SecM-stalled Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GUUUGGGAC

Length

9 nucleotides

Bulged bases

8QOA|1|Y|U|34

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOA_034 not in the Motif Atlas

Homologous match to HL_4YCO_002

Geometric discrepancy: 0.1297

The information below is about HL_4YCO_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

29

Unit IDs

8QOA|1|Y|G|32
8QOA|1|Y|U|33
8QOA|1|Y|U|34
8QOA|1|Y|U|35
8QOA|1|Y|G|36
8QOA|1|Y|G|37
8QOA|1|Y|G|38
8QOA|1|Y|A|39
8QOA|1|Y|C|40

Current chains

Chain Y

A-site tRNA-pro

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain X

mRNA

Chain a

Large subunit ribosomal RNA; LSU rRNA