HL_8QOA_035
3D structure
- PDB id
- 8QOA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of SecM-stalled Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- GUUCGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QOA_035 not in the Motif Atlas
- Homologous match to HL_6UGG_006
- Geometric discrepancy: 0.0739
- The information below is about HL_6UGG_006
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
8QOA|1|Y|G|54
8QOA|1|Y|U|55
8QOA|1|Y|U|56
8QOA|1|Y|C|57
8QOA|1|Y|G|58
8QOA|1|Y|A|59
8QOA|1|Y|A|60
8QOA|1|Y|U|61
8QOA|1|Y|C|62
Current chains
- Chain Y
- A-site tRNA-pro
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- Large ribosomal subunit protein uL16
Coloring options: