HL_8QOA_036

3D structure

PDB id

8QOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SecM-stalled Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CAGUUGGUAG

Length

10 nucleotides

Bulged bases

8QOA|1|Z|U|16, 8QOA|1|Z|U|17, 8QOA|1|Z|G|18, 8QOA|1|Z|G|19, 8QOA|1|Z|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOA_036 not in the Motif Atlas

Homologous match to HL_1QF6_001

Geometric discrepancy: 0.0886

The information below is about HL_1QF6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

8QOA|1|Z|C|13
8QOA|1|Z|A|14
8QOA|1|Z|G|15
8QOA|1|Z|U|16
8QOA|1|Z|U|17
8QOA|1|Z|G|18
8QOA|1|Z|G|19
8QOA|1|Z|U|20
8QOA|1|Z|A|21
8QOA|1|Z|G|22

Current chains

Chain Z

P-site tRNA-gly

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain f

Large ribosomal subunit protein uL5