HL_8QOA_046
3D structure
- PDB id
- 8QOA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of SecM-stalled Escherichia coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- CGGCGAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QOA_046 not in the Motif Atlas
- Homologous match to HL_5J7L_141
- Geometric discrepancy: 0.0442
- The information below is about HL_5J7L_141
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_37369.2
- Basepair signature
- cWW-tSH-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8QOA|1|a|C|246
8QOA|1|a|G|247
8QOA|1|a|G|248
8QOA|1|a|C|249
8QOA|1|a|G|250
8QOA|1|a|A|251
8QOA|1|a|G|252
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein bL35
- Chain 5
- E-site tRNA
- Chain k
- 50S ribosomal protein L15
- Chain w
- Large ribosomal subunit protein bL28
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