HL_8QOA_051

3D structure

PDB id

8QOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SecM-stalled Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8QOA|1|a|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOA_051 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0414

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8QOA|1|a|G|410
8QOA|1|a|G|411
8QOA|1|a|A|412
8QOA|1|a|C|413
8QOA|1|a|C|414
8QOA|1|a|A|415
8QOA|1|a|U|416
8QOA|1|a|C|417

Current chains

Chain a

23S rRNA

Nearby chains