3D structure

PDB id
8QOA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SecM-stalled Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2 Å

Loop

Sequence
CGACAC(6MZ)G
Length
8 nucleotides
Bulged bases
8QOA|1|a|A|1614, 8QOA|1|a|A|1616
QA status
Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8QOA_076 not in the Motif Atlas
Homologous match to HL_5J7L_173
Geometric discrepancy: 0.0621
The information below is about HL_5J7L_173
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_89567.2
Basepair signature
cWW-F-F-F
Number of instances in this motif group
8

Unit IDs

8QOA|1|a|C|1612
8QOA|1|a|G|1613
8QOA|1|a|A|1614
8QOA|1|a|C|1615
8QOA|1|a|A|1616
8QOA|1|a|C|1617
8QOA|1|a|6MZ|1618
8QOA|1|a|G|1619

Current chains

Chain a
23S rRNA

Nearby chains

Chain 1
Large ribosomal subunit protein bL34
Chain 6
Secretion monitor
Chain r
Large ribosomal subunit protein uL22

Coloring options:


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