HL_8QOA_086

3D structure

PDB id

8QOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SecM-stalled Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GUG(6MZ)AGAUGC

Length

10 nucleotides

Bulged bases

8QOA|1|a|A|2031, 8QOA|1|a|G|2032

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOA_086 not in the Motif Atlas

Homologous match to HL_5J7L_183

Geometric discrepancy: 0.0553

The information below is about HL_5J7L_183

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8QOA|1|a|G|2027
8QOA|1|a|U|2028
8QOA|1|a|G|2029
8QOA|1|a|6MZ|2030
8QOA|1|a|A|2031
8QOA|1|a|G|2032
8QOA|1|a|A|2033
8QOA|1|a|U|2034
8QOA|1|a|G|2035
8QOA|1|a|C|2036

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain q

Large ribosomal subunit protein bL21

Chain z

Large ribosomal subunit protein bL32