HL_8QOI_005

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

8QOI|1|L5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOI_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.4747

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8QOI|1|L5|U|204
8QOI|1|L5|C|205
8QOI|1|L5|U|206
8QOI|1|L5|G|207
8QOI|1|L5|A|208
8QOI|1|L5|U|209
8QOI|1|L5|C|210
8QOI|1|L5|G|211

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LC

Large ribosomal subunit protein uL4

Chain LY

60S ribosomal protein L26

Chain Le

60S ribosomal protein L32