HL_8QOI_012

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

UUUCCCGCGCGGGG

Length

14 nucleotides

Bulged bases

8QOI|1|L5|C|517, 8QOI|1|L5|C|519

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|U|512
8QOI|1|L5|U|513
8QOI|1|L5|U|514
8QOI|1|L5|C|515
8QOI|1|L5|C|516
8QOI|1|L5|C|517
8QOI|1|L5|G|518
8QOI|1|L5|C|519
8QOI|1|L5|G|642
8QOI|1|L5|C|643
8QOI|1|L5|G|644
8QOI|1|L5|G|645
8QOI|1|L5|G|646
8QOI|1|L5|G|647

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LL

60S ribosomal protein L13

Chain La

Large ribosomal subunit protein uL15