HL_8QOI_015

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GACUGUCCCCAGU

Length

13 nucleotides

Bulged bases

8QOI|1|L5|G|1178, 8QOI|1|L5|U|1179, 8QOI|1|L5|C|1181, 8QOI|1|L5|C|1182

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|G|1174
8QOI|1|L5|A|1175
8QOI|1|L5|C|1176
8QOI|1|L5|U|1177
8QOI|1|L5|G|1178
8QOI|1|L5|U|1179
8QOI|1|L5|C|1180
8QOI|1|L5|C|1181
8QOI|1|L5|C|1182
8QOI|1|L5|C|1183
8QOI|1|L5|A|1184
8QOI|1|L5|G|1185
8QOI|1|L5|U|1186

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

Large ribosomal subunit protein uL18

Chain LI

60S ribosomal protein L10-like