HL_8QOI_018

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

UCGCACGAAA

Length

10 nucleotides

Bulged bases

8QOI|1|L5|C|1367, 8QOI|1|L5|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|U|1364
8QOI|1|L5|C|1365
8QOI|1|L5|G|1366
8QOI|1|L5|C|1367
8QOI|1|L5|A|1368
8QOI|1|L5|C|1369
8QOI|1|L5|G|1370
8QOI|1|L5|A|1371
8QOI|1|L5|A|1372
8QOI|1|L5|A|1373

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LC

Large ribosomal subunit protein uL4

Chain LL

60S ribosomal protein L13

Chain LN

60S ribosomal protein L15

Chain LY

60S ribosomal protein L26