HL_8QOI_019

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

UGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOI_019 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.0645

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8QOI|1|L5|U|1389
8QOI|1|L5|G|1390
8QOI|1|L5|A|1391
8QOI|1|L5|A|1392
8QOI|1|L5|G|1393
8QOI|1|L5|G|1394

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LL

60S ribosomal protein L13

Chain LQ

60S ribosomal protein L18

Chain La

Large ribosomal subunit protein uL15

Chain Li

60S ribosomal protein L36