HL_8QOI_020

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GGCGCGCUCGCC

Length

12 nucleotides

Bulged bases

8QOI|1|L5|U|1410

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|G|1403
8QOI|1|L5|G|1404
8QOI|1|L5|C|1405
8QOI|1|L5|G|1406
8QOI|1|L5|C|1407
8QOI|1|L5|G|1408
8QOI|1|L5|C|1409
8QOI|1|L5|U|1410
8QOI|1|L5|C|1411
8QOI|1|L5|G|1412
8QOI|1|L5|C|1413
8QOI|1|L5|C|1414

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain La

Large ribosomal subunit protein uL15

Chain Lb

60S ribosomal protein L29