HL_8QOI_022

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CCGCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOI_022 not in the Motif Atlas

Geometric match to HL_6LTU_001

Geometric discrepancy: 0.0968

The information below is about HL_6LTU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8QOI|1|L5|C|1480
8QOI|1|L5|C|1481
8QOI|1|L5|G|1482
8QOI|1|L5|C|1483
8QOI|1|L5|G|1484

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LL

60S ribosomal protein L13

Chain Li

60S ribosomal protein L36