HL_8QOI_023

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOI_023 not in the Motif Atlas

Homologous match to HL_5TBW_019

Geometric discrepancy: 0.0826

The information below is about HL_5TBW_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8QOI|1|L5|G|1561
8QOI|1|L5|G|1562
8QOI|1|L5|A|1563
8QOI|1|L5|A|1564
8QOI|1|L5|A|1565
8QOI|1|L5|C|1566

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SL

40S ribosomal protein S11

Chain SN

40S ribosomal protein S13