HL_8QOI_029

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

8QOI|1|L5|G|1869

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOI_029 not in the Motif Atlas

Geometric match to HL_4V9F_028

Geometric discrepancy: 0.0809

The information below is about HL_4V9F_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8QOI|1|L5|G|1864
8QOI|1|L5|G|1865
8QOI|1|L5|U|1866
8QOI|1|L5|A|1867
8QOI|1|L5|A|1868
8QOI|1|L5|G|1869
8QOI|1|L5|C|1870

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LI

60S ribosomal protein L10-like