HL_8QOI_031

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GCAGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCC

Length

59 nucleotides

Bulged bases

8QOI|1|L5|G|1975, 8QOI|1|L5|U|1980, 8QOI|1|L5|G|1981, 8QOI|1|L5|G|1982, 8QOI|1|L5|A|1984, 8QOI|1|L5|U|1986, 8QOI|1|L5|U|1997, 8QOI|1|L5|U|2006, 8QOI|1|L5|A|2009, 8QOI|1|L5|C|2011

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|L5|G|1965
8QOI|1|L5|C|1966
8QOI|1|L5|A|1967
8QOI|1|L5|G|1968
8QOI|1|L5|G|1969
8QOI|1|L5|A|1970
8QOI|1|L5|C|1971
8QOI|1|L5|G|1972
8QOI|1|L5|G|1973
8QOI|1|L5|U|1974
8QOI|1|L5|G|1975
8QOI|1|L5|G|1976
8QOI|1|L5|C|1977
8QOI|1|L5|C|1978
8QOI|1|L5|A|1979
8QOI|1|L5|U|1980
8QOI|1|L5|G|1981
8QOI|1|L5|G|1982
8QOI|1|L5|A|1983
8QOI|1|L5|A|1984
8QOI|1|L5|G|1985
8QOI|1|L5|U|1986
8QOI|1|L5|C|1987
8QOI|1|L5|G|1988
8QOI|1|L5|G|1989
8QOI|1|L5|A|1990
8QOI|1|L5|A|1991
8QOI|1|L5|U|1992
8QOI|1|L5|C|1993
8QOI|1|L5|C|1994
8QOI|1|L5|G|1995
8QOI|1|L5|C|1996
8QOI|1|L5|U|1997
8QOI|1|L5|A|1998
8QOI|1|L5|A|1999
8QOI|1|L5|G|2000
8QOI|1|L5|G|2001
8QOI|1|L5|A|2002
8QOI|1|L5|G|2003
8QOI|1|L5|U|2004
8QOI|1|L5|G|2005
8QOI|1|L5|U|2006
8QOI|1|L5|G|2007
8QOI|1|L5|U|2008
8QOI|1|L5|A|2009
8QOI|1|L5|A|2010
8QOI|1|L5|C|2011
8QOI|1|L5|A|2012
8QOI|1|L5|A|2013
8QOI|1|L5|C|2014
8QOI|1|L5|U|2015
8QOI|1|L5|C|2016
8QOI|1|L5|A|2017
8QOI|1|L5|C|2018
8QOI|1|L5|C|2019
8QOI|1|L5|U|2020
8QOI|1|L5|G|2021
8QOI|1|L5|C|2022
8QOI|1|L5|C|2023

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LI

60S ribosomal protein L10-like

Chain Lm

Ubiquitin-60S ribosomal protein L40