HL_8QOI_032

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CCGCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOI_032 not in the Motif Atlas

Geometric match to HL_4V9F_021

Geometric discrepancy: 0.2759

The information below is about HL_4V9F_021

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8QOI|1|L5|C|2257
8QOI|1|L5|C|2258
8QOI|1|L5|G|2259
8QOI|1|L5|C|2260
8QOI|1|L5|G|2261

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LE

Large ribosomal subunit protein eL6

Chain Lr

60S ribosomal protein L28