HL_8QOI_052

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GA(A2M)GAAAU(PSU)C

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOI_052 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.2963

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8QOI|1|L5|G|3722
8QOI|1|L5|A|3723
8QOI|1|L5|A2M|3724
8QOI|1|L5|G|3725
8QOI|1|L5|A|3726
8QOI|1|L5|A|3727
8QOI|1|L5|A|3728
8QOI|1|L5|U|3729
8QOI|1|L5|PSU|3730
8QOI|1|L5|C|3731

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain Li

60S ribosomal protein L36

Chain Lo

60S ribosomal protein L36a