HL_8QOI_058

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

8QOI|1|L5|G|4195

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOI_058 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.0833

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8QOI|1|L5|C|4193
8QOI|1|L5|U|4194
8QOI|1|L5|G|4195
8QOI|1|L5|OMG|4196
8QOI|1|L5|G|4197
8QOI|1|L5|G|4198
8QOI|1|L5|C|4199
8QOI|1|L5|G|4200
8QOI|1|L5|G|4201

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LI

60S ribosomal protein L10-like

Chain Lb

60S ribosomal protein L29