HL_8QOI_061
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- CAGAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QOI_061 not in the Motif Atlas
- Homologous match to HL_8C3A_058
- Geometric discrepancy: 0.0917
- The information below is about HL_8C3A_058
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
8QOI|1|L5|C|4270
8QOI|1|L5|A|4271
8QOI|1|L5|G|4272
8QOI|1|L5|A|4273
8QOI|1|L5|A|4274
8QOI|1|L5|G|4275
8QOI|1|L5|G|4276
8QOI|1|L5|G|4277
Current chains
- Chain L5
- 28S rRNA (3773-MER)
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL18
- Chain LI
- 60S ribosomal protein L10-like
- Chain LT
- 60S ribosomal protein L21
- Chain Lo
- 60S ribosomal protein L36a
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