HL_8QOI_071

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8QOI|1|L5|G|4694, 8QOI|1|L5|C|4698

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOI_071 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1726

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8QOI|1|L5|C|4688
8QOI|1|L5|PSU|4689
8QOI|1|L5|G|4690
8QOI|1|L5|A|4691
8QOI|1|L5|A|4692
8QOI|1|L5|C|4693
8QOI|1|L5|G|4694
8QOI|1|L5|C|4695
8QOI|1|L5|C|4696
8QOI|1|L5|U|4697
8QOI|1|L5|C|4698
8QOI|1|L5|U|4699
8QOI|1|L5|A|4700
8QOI|1|L5|A|4701
8QOI|1|L5|G|4702

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40