HL_8QOI_072

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CCGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOI_072 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.378

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

8QOI|1|L5|C|4774
8QOI|1|L5|C|4775
8QOI|1|L5|G|4776
8QOI|1|L5|C|4858
8QOI|1|L5|C|4859
8QOI|1|L5|G|4860

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a