HL_8QOI_073

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GGAAAGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOI_073 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.1538

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8QOI|1|L5|G|4907
8QOI|1|L5|G|4908
8QOI|1|L5|A|4909
8QOI|1|L5|A|4910
8QOI|1|L5|A|4911
8QOI|1|L5|G|4912
8QOI|1|L5|G|4913
8QOI|1|L5|C|4914

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LO

60S ribosomal protein L13a