HL_8QOI_083
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- CGGCCGGUACAG
- Length
- 12 nucleotides
- Bulged bases
- 8QOI|1|S2|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QOI_083 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.3226
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8QOI|1|S2|C|69
8QOI|1|S2|G|70
8QOI|1|S2|G|71
8QOI|1|S2|C|72
8QOI|1|S2|C|73
8QOI|1|S2|G|74
8QOI|1|S2|G|75
8QOI|1|S2|U|76
8QOI|1|S2|A|77
8QOI|1|S2|C|78
8QOI|1|S2|A|79
8QOI|1|S2|G|80
Current chains
- Chain S2
- 18S rRNA (1740-MER)
Nearby chains
- Chain LW
- 60S ribosomal protein L24
- Chain SG
- 40S ribosomal protein S6
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