HL_8QOI_084

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GUA(A2M)UUC

Length

7 nucleotides

Bulged bases

8QOI|1|S2|A|158, 8QOI|1|S2|U|160, 8QOI|1|S2|U|161

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOI_084 not in the Motif Atlas

Homologous match to HL_8C3A_194

Geometric discrepancy: 0.0882

The information below is about HL_8C3A_194

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8QOI|1|S2|G|156
8QOI|1|S2|U|157
8QOI|1|S2|A|158
8QOI|1|S2|A2M|159
8QOI|1|S2|U|160
8QOI|1|S2|U|161
8QOI|1|S2|C|162

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24