HL_8QOI_085

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CCUUCGCGGG

Length

10 nucleotides

Bulged bases

8QOI|1|S2|U|197, 8QOI|1|S2|U|198

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOI_085 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.142

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8QOI|1|S2|C|195
8QOI|1|S2|C|196
8QOI|1|S2|U|197
8QOI|1|S2|U|198
8QOI|1|S2|C|199
8QOI|1|S2|G|200
8QOI|1|S2|C|201
8QOI|1|S2|G|202
8QOI|1|S2|G|203
8QOI|1|S2|G|204

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain SI

40S ribosomal protein S8