HL_8QOI_091

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CAU(OMC)CAAGG(A2M)AG

Length

12 nucleotides

Bulged bases

8QOI|1|S2|A|464

QA status

Modified nucleotides: OMC, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|S2|C|459
8QOI|1|S2|A|460
8QOI|1|S2|U|461
8QOI|1|S2|OMC|462
8QOI|1|S2|C|463
8QOI|1|S2|A|464
8QOI|1|S2|A|465
8QOI|1|S2|G|466
8QOI|1|S2|G|467
8QOI|1|S2|A2M|468
8QOI|1|S2|A|469
8QOI|1|S2|G|470

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain LV

60S ribosomal protein L23

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24