HL_8QOI_097
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- UG(PSU)UCAAAG
- Length
- 9 nucleotides
- Bulged bases
- 8QOI|1|S2|G|821
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QOI_097 not in the Motif Atlas
- Homologous match to HL_4V88_203
- Geometric discrepancy: 0.3236
- The information below is about HL_4V88_203
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
8QOI|1|S2|U|820
8QOI|1|S2|G|821
8QOI|1|S2|PSU|822
8QOI|1|S2|U|823
8QOI|1|S2|C|824
8QOI|1|S2|A|825
8QOI|1|S2|A|826
8QOI|1|S2|A|827
8QOI|1|S2|G|828
Current chains
- Chain S2
- 18S rRNA (1740-MER)
Nearby chains
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SJ
- 40S ribosomal protein S9
- Chain SY
- 40S ribosomal protein S24
Coloring options: