HL_8QOI_100

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GAGGUGAAAU(PSU)C

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|S2|G|956
8QOI|1|S2|A|957
8QOI|1|S2|G|958
8QOI|1|S2|G|959
8QOI|1|S2|U|960
8QOI|1|S2|G|961
8QOI|1|S2|A|962
8QOI|1|S2|A|963
8QOI|1|S2|A|964
8QOI|1|S2|U|965
8QOI|1|S2|PSU|966
8QOI|1|S2|C|967

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain SF

40S ribosomal protein S5

Chain SO

40S ribosomal protein S14

Chain Sa

40S ribosomal protein S26