HL_8QOI_107

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GAUUGAUAGCUC

Length

12 nucleotides

Bulged bases

8QOI|1|S2|U|1300, 8QOI|1|S2|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8QOI|1|S2|G|1294
8QOI|1|S2|A|1295
8QOI|1|S2|U|1296
8QOI|1|S2|U|1297
8QOI|1|S2|G|1298
8QOI|1|S2|A|1299
8QOI|1|S2|U|1300
8QOI|1|S2|A|1301
8QOI|1|S2|G|1302
8QOI|1|S2|C|1303
8QOI|1|S2|U|1304
8QOI|1|S2|C|1305

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain SP

40S ribosomal protein S15

Chain Sd

40S ribosomal protein S29

Chain Sf

Ubiquitin-40S ribosomal protein S27a